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Abstract Riparian zones are a critical terrestrial‐aquatic ecotone. They play important roles in ecosystems including (1) harboring biodiversity, (2) influencing light and carbon fluxes to aquatic food webs, (3) maintaining water quality and streamflow, (4) enhancing aquatic habitat, (5) influencing greenhouse gas production, and (6) sequestering carbon. Defining what qualifies as a riparian zone is a first step to delineation. Many definitions of riparian boundaries focus on static attributes or a subset of potential functions without recognizing that they are spatially continuous, temporally dynamic, and multi‐dimensional. We emphasize that definitions should consider multiple ecological and biogeochemical functions and physical gradients, and explore how this approach influences spatial characterization of riparian zones. One or more of the following properties can guide riparian delineation: (1) distinct species, elevated biodiversity, or species with specific adaptations to flooding and inundation near streams relative to nearby upland areas; (2) unique vegetation structure directly influencing irradiance or organic material inputs to aquatic ecosystems; (3) hydrologic and geomorphic features or processes maintaining floodplains; (4) hydric soil properties that differ from the uplands; and/or (5) elevated retention of dissolved and suspended materials relative to adjacent uplands. Considering these properties for an operational and dynamic definition of riparian zones recognizes that riparian boundaries vary in space (e.g., variation of riparian corridor widths within or among watersheds) and time (e.g., responses to hydrological variance and climate change). Inclusive definitions addressing multiple riparian functions could facilitate attainment of research and management goals by linking properties of interest to specific outcomes. 

Abstract The loose‐equilibrium concept (LEC) predicts that ecological assemblages change transiently but return towards an earlier or average structure. The LEC framework can help determine whether assemblages vary within expected ranges or are permanently altered following environmental change.Long‐lived, slow‐growing animals typically respond slowly to environmental change, and their assemblage dynamics may respond over decades, which transcends most ecological studies. Unionid mussels are valuable for studying dynamics of long‐lived animals because they can live >50 years and occur in dense, species‐rich assemblages (mussel beds). Mussel beds can persist for decades, but disturbance can affect species differently, resulting in variable trajectories according to differences in species composition within and among rivers.We used long‐term data sets (10–40 years) from seven rivers in the eastern United States to evaluate the magnitude, pace and directionality of mussel assemblage change within the context of the LEC.Site trajectories varied within and among streams and showed patterns consistent with either the LEC or directional change. In streams that conformed to the LEC, rank abundance of dominant species remained stable over time, but directional change in other streams was driven by changes in the rank abundance and composition of dominant species.Characteristics of mussel assemblage change varied widely, ranging from those conforming to the LEC to those showing strong directional change. Conservation approaches that attempt to maintain or create a desired assemblage condition should acknowledge this wide range of possible assemblage trajectories and that the environmental factors that influence those changes remain poorly understood. 

Abstract Surface topography can influence flow pathways and the location of runoff source areas and water transport in steep headwater catchments. However, the influence of topography on spatial patterns of residual soil moisture is less well understood. We measured soil volumetric water content (VWC) on 14 dates at 0–30 and 30–60 cm depth at 54 sites on a steep, 10 ha north‐facing forested slope in the west‐central Cascades Mountains of Oregon, USA. Spatial patterns in VWC were persistent over time, and contrary to expectations VWC at 30–60 cm depth was greater on divergent than convergent slopes, especially during wet periods (R² = 0.27,p < 0.001). Vegetation characteristics were assessed for all VWC monitoring locations and soil properties were determined for 13 locations as local factors that affect spatial patterns in VWC. Mean VWC over all dates was negatively correlated to gravimetric rock content (R² = 0.28,p = 0.03) and positively correlated to water storage at field capacity (R² = 0.56,p < 0.01). The variability in rock content in quick‐draining soils influenced soil‐water retention, and by extension, created spatially heterogenous but temporally persistent patterns in VWC. While spatial patterns were persistent, they were not easily explained by surficial topography in a steep, mountainous landscape with rocky, well‐drained soils. Further research is needed to understand if combined soil‐terrain metrics would be a more useful proxy for VWC than terrain‐based wetness metrics alone. 

Understanding the driving mechanisms behind existing patterns of vegetation hydraulic traits and community trait diversity is critical for advancing predictions of the terrestrial carbon cycle because hydraulic traits affect both ecosystem and Earth system responses to changing water availability. Here, we leverage an extensive trait database and a long-term continental forest plot network to map changes in community trait distributions and quantify “trait velocities” (the rate of change in community-weighted traits) for different regions and different forest types across the United States from 2000 to the present. We show that diversity in hydraulic traits and photosynthetic characteristics is more related to local water availability than overall species diversity. Finally, we find evidence for coordinated shifts toward communities with more drought-tolerant traits driven by tree mortality, but the magnitude of responses differs depending on forest type. The hydraulic trait distribution maps provide a publicly available platform to fundamentally advance understanding of community trait change in response to climate change and predictive abilities of mechanistic vegetation models. 

Abstract Fire has transformative effects on soil biological, chemical, and physical properties in terrestrial ecosystems around the world. While methods for estimating fire characteristics and associated effects aboveground have progressed in recent decades, there remain major challenges in characterizing soil heating and associated effects belowground. Overcoming these challenges is crucial for understanding how fire influences soil carbon storage, biogeochemical cycling, and ecosystem recovery. In this paper, we present a novel framework for characterizing belowground heating and effects. The framework includes (1) an open‐source model to estimate fire‐driven soil heating, cooling, and the biotic effects of heating across depths and over time (Soil Heating in Fire model; SheFire) and (2) a simple field method for recording soil temperatures at multiple depths using self‐contained temperature sensor and data loggers (i.e., iButtons), installed along a wooden stake inserted into the soil (i.e., an iStake). The iStake overcomes many logistical challenges associated with obtaining temperature profiles using thermocouples. Heating measurements provide inputs to the SheFire model, and modeled soil heating can then be used to derive ecosystem response functions, such as heating effects on microorganisms and tissues. To validate SheFire estimates, we conducted a burn table experiment using iStakes to record temperatures that were in turn used to fit the SheFire model. We then compared SheFire predicted temperatures against measured temperatures at other soil depths. To benchmark iStake measurements against those recorded by thermocouples, we co‐located both types of sensors in the burn table experiment. We found that SheFire demonstrated skill in interpolating and extrapolating soil temperatures, with the largest errors occurring at the shallowest depths. We also found that iButton sensors are comparable to thermocouples for recording soil temperatures during fires. Finally, we present a case study using iStakes and SheFire to estimate in situ soil heating during a prescribed fire and demonstrate how observed heating regimes would influence seed and tree root vascular cambium survival at different soil depths. This measurement‐modeling framework provides a cutting‐edge approach for describing soil temperature regimes (i.e., soil heating) through a soil profile and predicting biological responses. 

Abstract Grassland and other herbaceous communities cover significant portions of Earth's terrestrial surface and provide many critical services, such as carbon sequestration, wildlife habitat, and food production. Forecasts of global change impacts on these services will require predictive tools, such as process‐based dynamic vegetation models. Yet, model representation of herbaceous communities and ecosystems lags substantially behind that of tree communities and forests. The limited representation of herbaceous communities within models arises from two important knowledge gaps: first, our empirical understanding of the principles governing herbaceous vegetation dynamics is either incomplete or does not provide mechanistic information necessary to drive herbaceous community processes with models; second, current model structure and parameterization of grass and other herbaceous plant functional types limits the ability of models to predict outcomes of competition and growth for herbaceous vegetation. In this review, we provide direction for addressing these gaps by: (1) presenting a brief history of how vegetation dynamics have been developed and incorporated into earth system models, (2) reporting on a model simulation activity to evaluate current model capability to represent herbaceous vegetation dynamics and ecosystem function, and (3) detailing several ecological properties and phenomena that should be a focus for both empiricists and modelers to improve representation of herbaceous vegetation in models. Together, empiricists and modelers can improve representation of herbaceous ecosystem processes within models. In so doing, we will greatly enhance our ability to forecast future states of the earth system, which is of high importance given the rapid rate of environmental change on our planet. 

Abstract For wildlife inhabiting snowy environments, snow properties such as onset date, depth, strength, and distribution can influence many aspects of ecology, including movement, community dynamics, energy expenditure, and forage accessibility. As a result, snow plays a considerable role in individual fitness and ultimately population dynamics, and its evaluation is, therefore, important for comprehensive understanding of ecosystem processes in regions experiencing snow. Such understanding, and particularly study of how wildlife–snow relationships may be changing, grows more urgent as winter processes become less predictable and often more extreme under global climate change. However, studying and monitoring wildlife–snow relationships continue to be challenging because characterizing snow, an inherently complex and constantly changing environmental feature, and identifying, accessing, and applying relevant snow information at appropriate spatial and temporal scales, often require a detailed understanding of physical snow science and technologies that typically lie outside the expertise of wildlife researchers and managers. We argue that thoroughly assessing the role of snow in wildlife ecology requires substantive collaboration between researchers with expertise in each of these two fields, leveraging the discipline‐specific knowledge brought by both wildlife and snow professionals. To facilitate this collaboration and encourage more effective exploration of wildlife–snow questions, we provide a five‐step protocol: (1) identify relevant snow property information; (2) specify spatial, temporal, and informational requirements; (3) build the necessary datasets; (4) implement quality control procedures; and (5) incorporate snow information into wildlife analyses. Additionally, we explore the types of snow information that can be used within this collaborative framework. We illustrate, in the context of two examples, field observations, remote‐sensing datasets, and four example modeling tools that simulate spatiotemporal snow property distributions and, in some cases, evolutions. For each type of snow data, we highlight the collaborative opportunities for wildlife and snow professionals when designing snow data collection efforts, processing snow remote sensing products, producing tailored snow datasets, and applying the resulting snow information in wildlife analyses. We seek to provide a clear path for wildlife professionals to address wildlife–snow questions and improve ecological inference by integrating the best available snow science through collaboration with snow professionals. 

Abstract Manipulation of host phenotypes by parasites is hypothesized to be an adaptive strategy enhancing parasite transmission across hosts and generations. Characterizing the molecular mechanisms of manipulation is important to advance our understanding of host–parasite coevolution. The trematode (Levinseniella byrdi) is known to alter the colour and behaviour of its amphipod host (Orchestia grillus) presumably increasing predation of amphipods which enhances trematode transmission through its life cycle. We sampled 24 infected and 24 uninfected amphipods from a salt marsh in Massachusetts to perform differential gene expression analysis. In addition, we constructed novel genomic tools forO. grillusincluding a de novo genome and transcriptome. We discovered that trematode infection results in upregulation of amphipod transcripts associated with pigmentation and detection of external stimuli, and downregulation of multiple amphipod transcripts implicated in invertebrate immune responses, such as vacuolar ATPase genes. We hypothesize that suppression of immune genes and the altered expression of genes associated with coloration and behaviour may allow the trematode to persist in the amphipod and engage in further biochemical manipulation that promotes transmission. The genomic tools and transcriptomic analyses reported provide new opportunities to discover how parasites alter diverse pathways underlying host phenotypic changes in natural populations. 

Abstract Camera trapping has revolutionized wildlife ecology and conservation by providing automated data acquisition, leading to the accumulation of massive amounts of camera trap data worldwide. Although management and processing of camera trap‐derived Big Data are becoming increasingly solvable with the help of scalable cyber‐infrastructures, harmonization and exchange of the data remain limited, hindering its full potential. There is currently no widely accepted standard for exchanging camera trap data. The only existing proposal, “Camera Trap Metadata Standard” (CTMS), has several technical shortcomings and limited adoption. We present a new data exchange format, the Camera Trap Data Package (Camtrap DP), designed to allow users to easily exchange, harmonize and archive camera trap data at local to global scales. Camtrap DP structures camera trap data in a simple yet flexible data model consisting of three tables (Deployments, Media and Observations) that supports a wide range of camera deployment designs, classification techniques (e.g., human and AI, media‐based and event‐based) and analytical use cases, from compiling species occurrence data through distribution, occupancy and activity modeling to density estimation. The format further achieves interoperability by building upon existing standards, Frictionless Data Package in particular, which is supported by a suite of open software tools to read and validate data. Camtrap DP is the consensus of a long, in‐depth, consultation and outreach process with standard and software developers, the main existing camera trap data management platforms, major players in the field of camera trapping and the Global Biodiversity Information Facility (GBIF). Under the umbrella of the Biodiversity Information Standards (TDWG), Camtrap DP has been developed openly, collaboratively and with version control from the start. We encourage camera trapping users and developers to join the discussion and contribute to the further development and adoption of this standard.